Ok, let's take an example... So, a new player goes hunting and he stumbles across Super Mutant Remnants (by description) in the Boneyard. He kills a few of them. Later he is heading to Broken Hills, on on his way there few zones away he encounters 'Unity Patrol'. He's thinking to himself, oh well... i got no beef with these. The consequence? The Unity Patrol kills him.
So... Either you set both Super Mutant Remnants AND The Unity as the same NAME (Call Super Mutant Remnants for 'Unity Patrol' LOL) (which would require even more effort i think for it to feel good (why is there Super Mutants scattered all around, but both Super Mutants, Ghouls and Humans ONLY near broken hills?)
, OR you make them separate factions... Please do either of them...
Also... If These Super Mutants Remnants are scattered everywhere, have no contact with (NIGHTKIN, ghouls nor humans), and are not EVEN FOUND in a Unity Patrol (NIGHTKIN is found in Unity Patrols)... How would they (these disorganized muties) magically NOTIFY the NIGHTKIN, HUMANS and GHOULS in the few Unity Patrols that are near Broken Hills about a players reputation amongst them? It doesn't make sense....